Submission Page

Welcome to BiNChE2!

Here, you can submit your study set for enrichment analysis based on the ChEBI ontology.

Input Study Set

The input molecular entitites should either be in ChEBI ID format (e.g., CHEBI:16236) or as SMILES (eg. C2H6O). A mix of both is allowed.

Example submission format:

CHEBI:31463
CHEBI:28426
        

Example submission format with weights (tab or space-separated):

CHEBI:17079	0.7665
CHEBI:46816	0.7465
        
Using SMILES

If using SMILES, please read the "About Using SMILES" section and specify your preference below.



Specify Target of Enrichment

Read the "About Selecting Target of Enrichment" section for more information.

About Selecting Target of Enrichment

ChEBI structure classification: The structure classification describes a molecular entity based on its composition and/or the connectivity between its constituent atoms.

ChEBI role classification: The role classification describes the role of a molecular entity within a biological context and/or its intended use by humans.

ChEBI structure and role classification ("Both"): The structure and role classification is the union of both classifications. Note that the structure classification is significantly larger than the role classification.


About Using SMILES

When using SMILES, the enrichment analysis will be performed on the ChEBI entities that are mapped to the input SMILES. If a SMILES is not mapped to any ChEBI entity, its direct parent classes can be predicted (this is done with Chebifier) and used for the enrichment analysis. Alternatively, the unmapped SMILES can be completely excluded.